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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411
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        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2025-06-20, 14:34 EDT based on data in: /lustre07/scratch/karencgs/Cannabis_sativa/fastpReports

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        General Statistics

        Showing 130/130 rows and 5/7 columns.
        Sample Name% Duplication% > Q30Mb Q30 basesReads After FilteringGC content% PF% Adapter
        SRR192369_1
        39.9%
        95.6%
        4614.2Mb
        65.3M
        50.1%
        94.3%
        9.0%
        SRR192370_1
        46.5%
        96.3%
        4781.0Mb
        66.5M
        47.7%
        97.2%
        2.1%
        SRR192371_1
        32.2%
        96.8%
        4813.1Mb
        67.1M
        45.8%
        95.4%
        8.3%
        SRR192372_1
        25.3%
        96.9%
        5108.5Mb
        70.9M
        44.8%
        96.3%
        4.6%
        SRR192373_1
        51.6%
        97.3%
        4349.3Mb
        60.0M
        50.7%
        96.9%
        4.1%
        SRR306861
        60.1%
        95.4%
        1045.7Mb
        31.3M
        45.2%
        96.1%
        SRR306862
        64.2%
        95.6%
        1079.6Mb
        32.3M
        45.3%
        95.6%
        SRR306863
        61.8%
        97.3%
        878.3Mb
        25.8M
        46.0%
        98.2%
        SRR306864
        70.0%
        96.7%
        1008.8Mb
        29.8M
        44.0%
        93.2%
        5.1%
        SRR306865
        71.1%
        96.7%
        996.3Mb
        29.5M
        44.4%
        92.3%
        6.0%
        SRR306866
        71.5%
        96.1%
        1036.6Mb
        30.9M
        47.9%
        95.2%
        2.7%
        SRR306867
        65.9%
        95.7%
        939.8Mb
        28.1M
        48.0%
        94.2%
        1.9%
        SRR306868
        59.5%
        95.6%
        1085.8Mb
        32.5M
        47.2%
        94.4%
        1.6%
        SRR306869
        57.4%
        92.5%
        888.8Mb
        27.5M
        47.2%
        93.2%
        SRR306870
        60.9%
        94.8%
        935.4Mb
        28.3M
        45.8%
        94.3%
        SRR306871
        76.3%
        95.9%
        892.2Mb
        26.6M
        49.5%
        93.9%
        1.1%
        SRR306872
        82.1%
        96.0%
        900.3Mb
        26.9M
        50.1%
        94.4%
        0.8%
        SRR306874
        70.9%
        95.3%
        1011.8Mb
        30.4M
        46.9%
        93.7%
        0.8%
        SRR306875
        71.3%
        96.0%
        978.3Mb
        29.2M
        48.5%
        95.2%
        0.5%
        SRR306877
        65.6%
        97.0%
        901.3Mb
        26.6M
        42.5%
        96.8%
        SRR306884
        73.7%
        94.8%
        1023.1Mb
        30.9M
        47.1%
        95.6%
        1.0%
        SRR306885
        71.5%
        94.6%
        1050.9Mb
        31.8M
        45.2%
        96.0%
        0.4%
        SRR306886
        82.3%
        96.6%
        857.1Mb
        25.4M
        44.6%
        97.6%
        0.4%
        SRR351932
        56.9%
        100.0%
        339.6Mb
        8.9M
        43.6%
        99.9%
        0.2%
        SRR351933
        50.7%
        100.0%
        875.5Mb
        9.2M
        43.4%
        100.0%
        SRR352195
        56.4%
        100.0%
        3555.1Mb
        37.8M
        43.6%
        100.0%
        8.7%
        SRR352196
        68.7%
        100.0%
        3540.9Mb
        37.4M
        44.4%
        99.7%
        1.4%
        SRR352198
        61.7%
        100.0%
        5132.5Mb
        54.0M
        43.5%
        100.0%
        SRR352200
        64.9%
        100.0%
        5277.3Mb
        55.6M
        44.3%
        100.0%
        1.3%
        SRR352201
        58.3%
        100.0%
        5686.3Mb
        60.2M
        43.7%
        99.7%
        3.4%
        SRR352202
        62.3%
        100.0%
        3485.3Mb
        37.3M
        45.0%
        99.9%
        16.0%
        SRR10600874_1
        31.0%
        94.6%
        6213.0Mb
        49.1M
        49.0%
        94.6%
        0.2%
        SRR10600875_1
        33.6%
        95.2%
        10756.8Mb
        83.9M
        48.9%
        94.8%
        0.2%
        SRR10600877_1
        44.7%
        92.6%
        7682.2Mb
        65.5M
        53.3%
        93.3%
        0.2%
        SRR10600878_1
        26.3%
        95.6%
        8091.6Mb
        62.6M
        46.2%
        94.1%
        0.1%
        SRR10600879_1
        37.5%
        95.5%
        10754.3Mb
        84.2M
        48.2%
        94.3%
        0.2%
        SRR10600880_1
        29.9%
        95.6%
        7778.3Mb
        60.4M
        47.2%
        93.7%
        0.2%
        SRR10600881_1
        28.1%
        95.7%
        4938.2Mb
        38.4M
        47.3%
        94.4%
        0.2%
        SRR10600882_1
        24.6%
        95.5%
        8426.2Mb
        65.3M
        45.8%
        93.0%
        0.1%
        SRR10600883_1
        32.5%
        95.5%
        11325.0Mb
        88.2M
        46.3%
        93.6%
        0.2%
        SRR10600884_1
        35.1%
        96.4%
        16077.1Mb
        122.9M
        45.4%
        94.0%
        0.2%
        SRR10600885_1
        46.1%
        96.5%
        18131.2Mb
        138.6M
        46.0%
        95.2%
        0.3%
        SRR10600888_1
        43.6%
        95.3%
        10456.5Mb
        82.7M
        51.5%
        95.4%
        0.2%
        SRR10600889_1
        17.3%
        94.4%
        5070.1Mb
        40.7M
        46.2%
        93.4%
        0.3%
        SRR10600890_1
        38.0%
        95.5%
        6106.7Mb
        47.5M
        49.8%
        91.3%
        0.1%
        SRR10600892_1
        47.5%
        96.1%
        15480.6Mb
        119.8M
        49.6%
        94.4%
        0.2%
        SRR10600893_1
        33.4%
        95.4%
        18784.7Mb
        146.3M
        47.7%
        90.3%
        0.1%
        SRR10600894_1
        39.2%
        94.4%
        14839.9Mb
        119.3M
        50.7%
        94.5%
        0.2%
        SRR10600896_1
        29.8%
        94.4%
        18348.9Mb
        146.7M
        48.2%
        93.5%
        0.2%
        SRR10600899_1
        29.2%
        94.7%
        7768.5Mb
        60.9M
        48.8%
        93.7%
        0.1%
        SRR10600900_1
        31.8%
        94.4%
        44598.8Mb
        357.7M
        47.0%
        93.1%
        0.2%
        SRR10600901_1
        24.7%
        94.7%
        4107.7Mb
        32.8M
        48.5%
        94.3%
        0.2%
        SRR10600902_1
        39.3%
        95.6%
        13381.3Mb
        102.7M
        49.8%
        93.2%
        0.1%
        SRR10600903_1
        45.1%
        95.7%
        12728.9Mb
        98.9M
        50.4%
        94.1%
        0.2%
        SRR10600904_1
        43.6%
        95.7%
        12024.0Mb
        92.1M
        50.1%
        94.2%
        0.1%
        SRR10600905_1
        37.5%
        95.7%
        17078.6Mb
        131.1M
        48.9%
        93.5%
        0.1%
        SRR10600906_1
        35.3%
        95.8%
        6439.7Mb
        49.5M
        49.5%
        93.5%
        0.1%
        SRR10600907_1
        33.5%
        95.1%
        7317.7Mb
        57.3M
        49.7%
        94.9%
        0.2%
        SRR10600908_1
        33.2%
        94.8%
        6699.3Mb
        52.4M
        49.7%
        94.2%
        0.1%
        SRR10600909_1
        39.3%
        95.6%
        13262.2Mb
        102.0M
        48.9%
        93.0%
        0.1%
        SRR10600910_1
        29.3%
        94.6%
        8854.3Mb
        69.8M
        48.5%
        94.0%
        0.1%
        SRR10600911_1
        40.5%
        95.8%
        10753.3Mb
        82.3M
        50.0%
        93.9%
        0.1%
        SRR10600912_1
        32.0%
        95.0%
        7915.8Mb
        61.7M
        49.1%
        94.6%
        0.1%
        SRR10600913_1
        32.3%
        95.0%
        7640.3Mb
        59.8M
        49.1%
        94.7%
        0.2%
        SRR10600914_1
        37.6%
        96.0%
        11300.1Mb
        86.8M
        48.9%
        94.2%
        0.2%
        SRR10600915_1
        28.9%
        95.2%
        14753.6Mb
        115.0M
        47.5%
        92.5%
        0.1%
        SRR10600916_1
        38.5%
        95.5%
        7606.6Mb
        58.6M
        49.9%
        93.2%
        0.1%
        SRR10600917_1
        34.3%
        95.1%
        14381.5Mb
        111.9M
        49.1%
        92.5%
        0.1%
        SRR10600918_1
        42.0%
        96.5%
        13193.3Mb
        100.9M
        47.4%
        95.8%
        0.2%
        SRR10600919_1
        42.3%
        95.8%
        14458.7Mb
        111.2M
        49.9%
        94.2%
        0.1%
        SRR10600920_1
        30.6%
        95.0%
        9725.4Mb
        76.2M
        48.7%
        94.2%
        0.2%
        SRR10600921_1
        38.3%
        96.0%
        11725.9Mb
        90.0M
        49.3%
        94.2%
        0.1%
        SRR10600922_1
        36.4%
        95.6%
        4899.3Mb
        37.7M
        49.9%
        92.9%
        0.1%
        SRR10600923_1
        36.8%
        95.6%
        8275.0Mb
        63.5M
        49.3%
        93.3%
        0.1%
        SRR10600924_1
        48.0%
        95.6%
        22241.4Mb
        170.7M
        50.4%
        93.2%
        0.1%
        SRR10600925_1
        35.0%
        95.8%
        7680.6Mb
        59.1M
        49.6%
        93.9%
        0.1%
        SRR10600926_1
        42.5%
        95.7%
        19221.6Mb
        148.4M
        49.5%
        92.7%
        0.1%
        SRR10600927_1
        34.3%
        95.8%
        11300.5Mb
        86.9M
        48.2%
        93.9%
        0.1%
        SRR10600928_1
        35.2%
        95.0%
        8201.0Mb
        64.2M
        49.9%
        95.0%
        0.1%
        SRR10600929_1
        43.8%
        95.5%
        7450.3Mb
        58.3M
        51.8%
        95.8%
        0.2%
        SRR10600930_1
        52.3%
        96.3%
        9946.9Mb
        76.6M
        51.8%
        95.5%
        0.2%
        SRR10600931_1
        35.2%
        94.9%
        8644.5Mb
        68.4M
        49.7%
        94.8%
        0.2%
        SRR10600932_1
        34.9%
        95.8%
        8009.7Mb
        61.7M
        48.1%
        93.7%
        0.2%
        SRR10600933_1
        50.8%
        95.2%
        10854.5Mb
        85.7M
        52.4%
        95.4%
        0.2%
        SRR10600934_1
        48.2%
        96.1%
        12254.6Mb
        94.2M
        52.4%
        95.4%
        0.2%
        SRR10600935_1
        27.2%
        94.8%
        7699.9Mb
        60.3M
        48.1%
        94.2%
        0.1%
        SRR10600936_1
        28.8%
        95.0%
        6850.2Mb
        53.7M
        48.3%
        94.7%
        0.2%
        SRR10600937_1
        34.7%
        95.2%
        9004.3Mb
        71.2M
        49.3%
        95.3%
        0.2%
        SRR10600938_1
        27.4%
        95.0%
        6818.3Mb
        53.5M
        47.9%
        94.2%
        0.2%
        SRR10600939_1
        28.5%
        95.2%
        8013.5Mb
        62.6M
        48.1%
        94.9%
        0.2%
        SRR10600940_1
        34.6%
        95.9%
        7164.5Mb
        55.2M
        49.1%
        94.3%
        0.2%
        SRR10600941_1
        26.2%
        94.5%
        8830.9Mb
        69.8M
        47.4%
        93.9%
        0.1%
        SRR10600942_1
        30.2%
        95.1%
        8541.7Mb
        66.8M
        48.1%
        94.5%
        0.1%
        SRR10600943_1
        26.7%
        95.3%
        5533.6Mb
        43.4M
        47.8%
        94.8%
        0.2%
        SRR10600944_1
        31.6%
        95.0%
        8672.8Mb
        68.2M
        49.1%
        94.6%
        0.2%
        SRR28955708_1
        26.0%
        100.0%
        5957.9Mb
        40.4M
        43.2%
        100.0%
        17.1%
        SRR28955709_1
        24.0%
        100.0%
        7963.6Mb
        54.8M
        44.2%
        100.0%
        26.1%
        SRR28955710_1
        26.3%
        100.0%
        7536.7Mb
        51.4M
        43.6%
        100.0%
        20.4%
        SRR29474897_1
        33.0%
        92.7%
        8087.9Mb
        58.8M
        45.0%
        98.2%
        1.4%
        SRR29474898_1
        26.0%
        93.0%
        8097.9Mb
        58.7M
        44.5%
        98.4%
        1.6%
        SRR29474899_1
        29.1%
        93.1%
        7926.0Mb
        57.3M
        44.6%
        98.5%
        1.3%
        SRR29474900_1
        31.3%
        92.8%
        8212.1Mb
        59.6M
        44.8%
        98.4%
        1.3%
        SRR29474901_1
        60.8%
        93.1%
        8274.7Mb
        59.9M
        46.0%
        98.5%
        1.4%
        SRR29474902_1
        46.3%
        93.1%
        8023.0Mb
        58.0M
        44.6%
        98.5%
        1.1%
        SRR29474903_1
        41.2%
        92.5%
        8011.0Mb
        58.3M
        45.1%
        98.3%
        1.4%
        SRR29474904_1
        53.0%
        93.0%
        7503.1Mb
        54.4M
        45.2%
        98.1%
        1.1%
        SRR29474905_1
        25.8%
        93.3%
        8149.7Mb
        58.8M
        44.3%
        98.5%
        2.1%
        SRR29474906_1
        28.5%
        93.2%
        8257.9Mb
        59.6M
        44.7%
        98.6%
        1.5%
        SRR29474907_1
        30.9%
        93.2%
        7836.4Mb
        56.7M
        44.6%
        98.3%
        1.5%
        SRR29474908_1
        25.7%
        93.2%
        8044.4Mb
        58.1M
        44.5%
        98.6%
        1.6%
        SRR29474909_1
        25.6%
        92.5%
        8081.3Mb
        58.9M
        44.6%
        98.3%
        1.3%
        SRR29474910_1
        53.8%
        93.5%
        7840.4Mb
        56.5M
        44.8%
        98.4%
        2.0%
        SRR29474911_1
        28.5%
        93.4%
        8058.4Mb
        58.2M
        44.1%
        98.6%
        2.6%
        SRR29474912_1
        30.8%
        93.2%
        7995.0Mb
        57.7M
        44.6%
        98.6%
        1.1%
        SRR29474913_1
        31.9%
        93.2%
        8043.1Mb
        58.1M
        44.2%
        98.5%
        1.7%
        SRR29474914_1
        36.7%
        93.3%
        7286.0Mb
        52.6M
        44.3%
        98.6%
        1.8%
        SRR29474915_1
        24.4%
        92.6%
        8903.7Mb
        64.9M
        44.4%
        97.9%
        1.7%
        SRR29474916_1
        24.4%
        92.9%
        7790.5Mb
        56.5M
        44.3%
        98.4%
        1.6%
        SRR33595210_1
        32.0%
        96.5%
        6579.2Mb
        46.6M
        44.2%
        99.7%
        1.9%
        SRR33595211_1
        31.1%
        97.1%
        7225.9Mb
        50.6M
        43.6%
        99.8%
        1.8%
        SRR33595212_1
        29.8%
        97.2%
        7900.0Mb
        55.3M
        43.6%
        99.8%
        1.7%
        SRR33595213_1
        28.4%
        97.2%
        6867.2Mb
        48.1M
        43.5%
        99.8%
        2.3%
        SRR33595214_1
        31.1%
        97.1%
        6737.0Mb
        47.4M
        43.5%
        99.8%
        2.3%
        SRR33595215_1
        25.8%
        97.0%
        5965.2Mb
        41.9M
        43.6%
        99.8%
        2.1%
        SRR33595216_1
        29.3%
        96.9%
        7509.2Mb
        52.8M
        43.3%
        99.8%
        2.1%
        SRR33595217_1
        34.1%
        96.9%
        7080.6Mb
        49.8M
        43.6%
        99.8%
        1.9%
        SRR33595218_1
        35.5%
        96.6%
        7088.1Mb
        50.0M
        44.4%
        99.7%
        1.5%
        SRR33595219_1
        34.4%
        97.0%
        7546.6Mb
        53.0M
        44.4%
        99.8%
        1.9%
        SRR33595220_1
        29.4%
        96.9%
        7011.0Mb
        49.3M
        43.6%
        99.8%
        1.7%
        SRR33595221_1
        28.9%
        97.1%
        7878.6Mb
        55.2M
        44.0%
        99.8%
        1.8%

        fastp

        Version: 0.23.4

        All-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...).URL: https://github.com/OpenGene/fastpDOI: 10.1093/bioinformatics/bty560

        Fastp goes through fastq files in a folder and perform a series of quality control and filtering. Quality control and reporting are displayed both before and after filtering, allowing for a clear depiction of the consequences of the filtering process. Notably, the latter can be conducted on a variety of parameters including quality scores, length, as well as the presence of adapters, polyG, or polyX tailing.

        Filtered Reads

        Filtering statistics of sampled reads.

        Created with MultiQC

        Insert Sizes

        Insert size estimation of sampled reads.

        Created with MultiQC

        Sequence Quality

        Average sequencing quality over each base of all reads.

        Created with MultiQC

        GC Content

        Average GC content over each base of all reads.

        Created with MultiQC

        N content

        Average N content over each base of all reads.

        Created with MultiQC


        Software Versions

        Software Versions lists versions of software tools extracted from file contents.

        SoftwareVersion
        fastp0.23.4